diff options
Diffstat (limited to 'meta-offline-voice-agent/recipes-python/python3-scikit-learn/files/0001-hack-around-numpy-get_include-to-force-looking-in-ta.patch')
| -rw-r--r-- | meta-offline-voice-agent/recipes-python/python3-scikit-learn/files/0001-hack-around-numpy-get_include-to-force-looking-in-ta.patch | 563 |
1 files changed, 563 insertions, 0 deletions
diff --git a/meta-offline-voice-agent/recipes-python/python3-scikit-learn/files/0001-hack-around-numpy-get_include-to-force-looking-in-ta.patch b/meta-offline-voice-agent/recipes-python/python3-scikit-learn/files/0001-hack-around-numpy-get_include-to-force-looking-in-ta.patch new file mode 100644 index 00000000..bd0f9458 --- /dev/null +++ b/meta-offline-voice-agent/recipes-python/python3-scikit-learn/files/0001-hack-around-numpy-get_include-to-force-looking-in-ta.patch @@ -0,0 +1,563 @@ +From eed8f56c787a251a6cad0f4291ca8f4055e463cf Mon Sep 17 00:00:00 2001 +From: Jack Mitchell <ml@embed.me.uk> +Date: Fri, 22 Jan 2021 10:16:08 +0000 +Subject: [PATCH] hack around numpy get_include to force looking in target + sysroot + +--- + sklearn/__check_build/setup.py | 4 ++-- + sklearn/cluster/setup.py | 12 ++++++------ + sklearn/datasets/setup.py | 4 ++-- + sklearn/decomposition/setup.py | 6 +++--- + sklearn/ensemble/setup.py | 22 +++++++++++----------- + sklearn/feature_extraction/setup.py | 4 ++-- + sklearn/linear_model/setup.py | 8 ++++---- + sklearn/manifold/setup.py | 6 +++--- + sklearn/metrics/cluster/setup.py | 4 ++-- + sklearn/neighbors/setup.py | 15 +++++++-------- + sklearn/preprocessing/setup.py | 4 ++-- + sklearn/setup.py | 4 ++-- + sklearn/svm/setup.py | 11 ++++++----- + sklearn/tree/setup.py | 10 +++++----- + sklearn/utils/setup.py | 16 ++++++++-------- + 15 files changed, 65 insertions(+), 65 deletions(-) + +diff --git a/sklearn/__check_build/setup.py b/sklearn/__check_build/setup.py +index b8c30d9c8..e2bfc90ee 100644 +--- a/sklearn/__check_build/setup.py ++++ b/sklearn/__check_build/setup.py +@@ -1,7 +1,7 @@ + # Author: Virgile Fritsch <virgile.fritsch@inria.fr> + # License: BSD 3 clause + +-import numpy ++import numpy, os + + + def configuration(parent_package='', top_path=None): +@@ -9,7 +9,7 @@ def configuration(parent_package='', top_path=None): + config = Configuration('__check_build', parent_package, top_path) + config.add_extension('_check_build', + sources=['_check_build.pyx'], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + return config + +diff --git a/sklearn/cluster/setup.py b/sklearn/cluster/setup.py +index 48ed25c5c..bd395e3aa 100644 +--- a/sklearn/cluster/setup.py ++++ b/sklearn/cluster/setup.py +@@ -2,7 +2,7 @@ + # License: BSD 3 clause + import os + +-import numpy ++import numpy, os + + + def configuration(parent_package='', top_path=None): +@@ -16,28 +16,28 @@ def configuration(parent_package='', top_path=None): + + config.add_extension('_dbscan_inner', + sources=['_dbscan_inner.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + language="c++") + + config.add_extension('_hierarchical_fast', + sources=['_hierarchical_fast.pyx'], + language="c++", +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_extension('_k_means_fast', + sources=['_k_means_fast.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_extension('_k_means_lloyd', + sources=['_k_means_lloyd.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_extension('_k_means_elkan', + sources=['_k_means_elkan.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_subpackage('tests') +diff --git a/sklearn/datasets/setup.py b/sklearn/datasets/setup.py +index 1107505d4..de4ac3c87 100644 +--- a/sklearn/datasets/setup.py ++++ b/sklearn/datasets/setup.py +@@ -1,5 +1,5 @@ + +-import numpy ++import numpy, os + import os + import platform + +@@ -14,7 +14,7 @@ def configuration(parent_package='', top_path=None): + if platform.python_implementation() != 'PyPy': + config.add_extension('_svmlight_format_fast', + sources=['_svmlight_format_fast.pyx'], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + config.add_subpackage('tests') + return config + +diff --git a/sklearn/decomposition/setup.py b/sklearn/decomposition/setup.py +index f915d6d78..26799c0af 100644 +--- a/sklearn/decomposition/setup.py ++++ b/sklearn/decomposition/setup.py +@@ -1,5 +1,5 @@ + import os +-import numpy ++import numpy, os + from numpy.distutils.misc_util import Configuration + + +@@ -12,12 +12,12 @@ def configuration(parent_package="", top_path=None): + + config.add_extension("_online_lda_fast", + sources=["_online_lda_fast.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_extension('_cdnmf_fast', + sources=['_cdnmf_fast.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_subpackage("tests") +diff --git a/sklearn/ensemble/setup.py b/sklearn/ensemble/setup.py +index 05d71cf31..c12382220 100644 +--- a/sklearn/ensemble/setup.py ++++ b/sklearn/ensemble/setup.py +@@ -1,4 +1,4 @@ +-import numpy ++import numpy, os + from numpy.distutils.misc_util import Configuration + + +@@ -7,7 +7,7 @@ def configuration(parent_package="", top_path=None): + + config.add_extension("_gradient_boosting", + sources=["_gradient_boosting.pyx"], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_subpackage("tests") + +@@ -15,39 +15,39 @@ def configuration(parent_package="", top_path=None): + config.add_extension( + "_hist_gradient_boosting._gradient_boosting", + sources=["_hist_gradient_boosting/_gradient_boosting.pyx"], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_extension("_hist_gradient_boosting.histogram", + sources=["_hist_gradient_boosting/histogram.pyx"], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_extension("_hist_gradient_boosting.splitting", + sources=["_hist_gradient_boosting/splitting.pyx"], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_extension("_hist_gradient_boosting._binning", + sources=["_hist_gradient_boosting/_binning.pyx"], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_extension("_hist_gradient_boosting._predictor", + sources=["_hist_gradient_boosting/_predictor.pyx"], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_extension("_hist_gradient_boosting._loss", + sources=["_hist_gradient_boosting/_loss.pyx"], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_extension("_hist_gradient_boosting._bitset", + sources=["_hist_gradient_boosting/_bitset.pyx"], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_extension("_hist_gradient_boosting.common", + sources=["_hist_gradient_boosting/common.pyx"], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_extension("_hist_gradient_boosting.utils", + sources=["_hist_gradient_boosting/utils.pyx"], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_subpackage("_hist_gradient_boosting.tests") + +diff --git a/sklearn/feature_extraction/setup.py b/sklearn/feature_extraction/setup.py +index 8c3bbb100..a872c7603 100644 +--- a/sklearn/feature_extraction/setup.py ++++ b/sklearn/feature_extraction/setup.py +@@ -3,7 +3,7 @@ import platform + + + def configuration(parent_package='', top_path=None): +- import numpy ++ import numpy, os + from numpy.distutils.misc_util import Configuration + + config = Configuration('feature_extraction', parent_package, top_path) +@@ -14,7 +14,7 @@ def configuration(parent_package='', top_path=None): + if platform.python_implementation() != 'PyPy': + config.add_extension('_hashing_fast', + sources=['_hashing_fast.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + config.add_subpackage("tests") + +diff --git a/sklearn/linear_model/setup.py b/sklearn/linear_model/setup.py +index d0c9e8c04..962340210 100644 +--- a/sklearn/linear_model/setup.py ++++ b/sklearn/linear_model/setup.py +@@ -1,5 +1,5 @@ + import os +-import numpy ++import numpy, os + + from sklearn._build_utils import gen_from_templates + +@@ -15,12 +15,12 @@ def configuration(parent_package='', top_path=None): + + config.add_extension('_cd_fast', + sources=['_cd_fast.pyx'], +- include_dirs=numpy.get_include(), ++ include_dirs=os.environ["NUMPY_INCLUDE_PATH"], + libraries=libraries) + + config.add_extension('_sgd_fast', + sources=['_sgd_fast.pyx'], +- include_dirs=numpy.get_include(), ++ include_dirs=os.environ["NUMPY_INCLUDE_PATH"], + libraries=libraries) + + # generate sag_fast from template +@@ -29,7 +29,7 @@ def configuration(parent_package='', top_path=None): + + config.add_extension('_sag_fast', + sources=['_sag_fast.pyx'], +- include_dirs=numpy.get_include()) ++ include_dirs=os.environ["NUMPY_INCLUDE_PATH"]) + + # add other directories + config.add_subpackage('tests') +diff --git a/sklearn/manifold/setup.py b/sklearn/manifold/setup.py +index 0db2d5d04..959a4996a 100644 +--- a/sklearn/manifold/setup.py ++++ b/sklearn/manifold/setup.py +@@ -1,6 +1,6 @@ + import os + +-import numpy ++import numpy, os + + + def configuration(parent_package="", top_path=None): +@@ -14,13 +14,13 @@ def configuration(parent_package="", top_path=None): + + config.add_extension("_utils", + sources=["_utils.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries, + extra_compile_args=["-O3"]) + + config.add_extension("_barnes_hut_tsne", + sources=["_barnes_hut_tsne.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries, + extra_compile_args=['-O3']) + +diff --git a/sklearn/metrics/cluster/setup.py b/sklearn/metrics/cluster/setup.py +index c39e414d9..98640b5f3 100644 +--- a/sklearn/metrics/cluster/setup.py ++++ b/sklearn/metrics/cluster/setup.py +@@ -1,6 +1,6 @@ + import os + +-import numpy ++import numpy, os + from numpy.distutils.misc_util import Configuration + + +@@ -11,7 +11,7 @@ def configuration(parent_package="", top_path=None): + libraries.append('m') + config.add_extension("_expected_mutual_info_fast", + sources=["_expected_mutual_info_fast.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_subpackage("tests") +diff --git a/sklearn/neighbors/setup.py b/sklearn/neighbors/setup.py +index 926404467..aeedcb940 100644 +--- a/sklearn/neighbors/setup.py ++++ b/sklearn/neighbors/setup.py +@@ -2,7 +2,7 @@ import os + + + def configuration(parent_package='', top_path=None): +- import numpy ++ import numpy, os + from numpy.distutils.misc_util import Configuration + + config = Configuration('neighbors', parent_package, top_path) +@@ -12,28 +12,27 @@ def configuration(parent_package='', top_path=None): + + config.add_extension('_ball_tree', + sources=['_ball_tree.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_extension('_kd_tree', + sources=['_kd_tree.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_extension('_dist_metrics', + sources=['_dist_metrics.pyx'], +- include_dirs=[numpy.get_include(), +- os.path.join(numpy.get_include(), +- 'numpy')], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"], ++ os.path.join(os.environ["NUMPY_INCLUDE_PATH"], 'numpy')], + libraries=libraries) + + config.add_extension('_typedefs', + sources=['_typedefs.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + config.add_extension("_quad_tree", + sources=["_quad_tree.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_subpackage('tests') +diff --git a/sklearn/preprocessing/setup.py b/sklearn/preprocessing/setup.py +index 29dae9b8f..7c059d90f 100644 +--- a/sklearn/preprocessing/setup.py ++++ b/sklearn/preprocessing/setup.py +@@ -2,7 +2,7 @@ import os + + + def configuration(parent_package='', top_path=None): +- import numpy ++ import numpy, os + from numpy.distutils.misc_util import Configuration + + config = Configuration('preprocessing', parent_package, top_path) +@@ -12,7 +12,7 @@ def configuration(parent_package='', top_path=None): + + config.add_extension('_csr_polynomial_expansion', + sources=['_csr_polynomial_expansion.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_subpackage('tests') +diff --git a/sklearn/setup.py b/sklearn/setup.py +index e5d7e6e26..a814bca87 100644 +--- a/sklearn/setup.py ++++ b/sklearn/setup.py +@@ -6,7 +6,7 @@ from sklearn._build_utils import cythonize_extensions + + def configuration(parent_package='', top_path=None): + from numpy.distutils.misc_util import Configuration +- import numpy ++ import numpy, os + + libraries = [] + if os.name == 'posix': +@@ -69,7 +69,7 @@ def configuration(parent_package='', top_path=None): + # add cython extension module for isotonic regression + config.add_extension('_isotonic', + sources=['_isotonic.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries, + ) + +diff --git a/sklearn/svm/setup.py b/sklearn/svm/setup.py +index dffcff8eb..d01614780 100644 +--- a/sklearn/svm/setup.py ++++ b/sklearn/svm/setup.py +@@ -1,6 +1,6 @@ + import os + from os.path import join +-import numpy ++import numpy, os + + + def configuration(parent_package='', top_path=None): +@@ -13,7 +13,7 @@ def configuration(parent_package='', top_path=None): + # newrand wrappers + config.add_extension('_newrand', + sources=['_newrand.pyx'], +- include_dirs=[numpy.get_include(), ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"], + join('src', 'newrand')], + depends=[join('src', 'newrand', 'newrand.h')], + language='c++', +@@ -34,6 +34,7 @@ def configuration(parent_package='', top_path=None): + extra_link_args=['-lstdc++'], + # Use C++11 to use the random number generator fix + extra_compiler_args=['-std=c++11'], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + ) + + libsvm_sources = ['_libsvm.pyx'] +@@ -45,7 +46,7 @@ def configuration(parent_package='', top_path=None): + + config.add_extension('_libsvm', + sources=libsvm_sources, +- include_dirs=[numpy.get_include(), ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"], + join('src', 'libsvm'), + join('src', 'newrand')], + libraries=['libsvm-skl'], +@@ -82,7 +83,7 @@ def configuration(parent_package='', top_path=None): + include_dirs=[join('.', 'src', 'liblinear'), + join('.', 'src', 'newrand'), + join('..', 'utils'), +- numpy.get_include()], ++ os.environ["NUMPY_INCLUDE_PATH"]], + depends=liblinear_depends, + # extra_compile_args=['-O0 -fno-inline'], + ) +@@ -93,7 +94,7 @@ def configuration(parent_package='', top_path=None): + libsvm_sparse_sources = ['_libsvm_sparse.pyx'] + config.add_extension('_libsvm_sparse', libraries=['libsvm-skl'], + sources=libsvm_sparse_sources, +- include_dirs=[numpy.get_include(), ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"], + join("src", "libsvm"), + join("src", "newrand")], + depends=[join("src", "libsvm", "svm.h"), +diff --git a/sklearn/tree/setup.py b/sklearn/tree/setup.py +index 079ae9d86..0308a5cf9 100644 +--- a/sklearn/tree/setup.py ++++ b/sklearn/tree/setup.py +@@ -1,6 +1,6 @@ + import os + +-import numpy ++import numpy, os + from numpy.distutils.misc_util import Configuration + + +@@ -11,22 +11,22 @@ def configuration(parent_package="", top_path=None): + libraries.append('m') + config.add_extension("_tree", + sources=["_tree.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries, + extra_compile_args=["-O3"]) + config.add_extension("_splitter", + sources=["_splitter.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries, + extra_compile_args=["-O3"]) + config.add_extension("_criterion", + sources=["_criterion.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries, + extra_compile_args=["-O3"]) + config.add_extension("_utils", + sources=["_utils.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries, + extra_compile_args=["-O3"]) + +diff --git a/sklearn/utils/setup.py b/sklearn/utils/setup.py +index 098adeecc..d24e1b1c8 100644 +--- a/sklearn/utils/setup.py ++++ b/sklearn/utils/setup.py +@@ -5,7 +5,7 @@ from sklearn._build_utils import gen_from_templates + + + def configuration(parent_package='', top_path=None): +- import numpy ++ import numpy, os + from numpy.distutils.misc_util import Configuration + + config = Configuration('utils', parent_package, top_path) +@@ -24,7 +24,7 @@ def configuration(parent_package='', top_path=None): + + config.add_extension('arrayfuncs', + sources=['arrayfuncs.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_extension('murmurhash', +@@ -34,12 +34,12 @@ def configuration(parent_package='', top_path=None): + + config.add_extension('graph_shortest_path', + sources=['graph_shortest_path.pyx'], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_extension('_fast_dict', + sources=['_fast_dict.pyx'], + language="c++", +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_extension('_openmp_helpers', +@@ -53,21 +53,21 @@ def configuration(parent_package='', top_path=None): + + config.add_extension('_seq_dataset', + sources=['_seq_dataset.pyx'], +- include_dirs=[numpy.get_include()]) ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]]) + + config.add_extension('_weight_vector', + sources=['_weight_vector.pyx'], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_extension("_random", + sources=["_random.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_extension("_logistic_sigmoid", + sources=["_logistic_sigmoid.pyx"], +- include_dirs=[numpy.get_include()], ++ include_dirs=[os.environ["NUMPY_INCLUDE_PATH"]], + libraries=libraries) + + config.add_subpackage('tests') |