Upgrade to thud

Changes include:
- Add LAYERSERIES_COMPAT definitions to layer.conf files
- Remove now unnecessary SECURITY_*FLAGS over-rides from distro
  configuration
- Set intel-corei7-64 preferred kernel version to 4.19 to match
  latest linux-intel kernel available in meta-intel
- Update qemuarm preferred kernel version to 4.18 to match latest
  linux-yocto
- Update firmware package and devicetree file names for raspberrypi3
- Remove linux-firmware bbappend specific to raspberrypi, it seems no
  longer required and breaks the cross SDK build
- Update linux-intel bbappend to 4.19, remove now unnecessary patch
- Remove now unnecessary lttng-modules backport
- Update linux-raspberrypi bbappend to 4.14 kernel
- Added kernel configuration fragment for raspberrypi to disable
  Kprobes. This is required until linux-raspberrypi is updated to
  greater than 4.14.104 to avoid a build failure in lttng-modules
  related to a check for known breakage in the kernel CONFIG_OPTPROBES
  code.
- Replace obsolete base_conditional usage with oe.utils.conditional
- Add gstreamer1.0-plugins-bad bbappend for raspberrypi3 to disable
  faad PACKAGECONFIG to avoid commercial license issues
- Remove unused and unbuildable Vayu gstreamer recipes
- Update linux-ti-staging bbappend for new BSP kernel
- Regen dcan2_pinmux_enable.patch for linux-ti-staging to remove fuzz
  warning, and remove upstreamed fix_dcan_addresses.patch
- Remove ipumm-fw from meta-agl-bsp/meta-ti, as newer version is
  available in the upstream BSP
- Update meta-agl-bsp/meta-ti weston patch to apply against 5.0.0
- Update meta-agl-bsp/meta-ti wayland-ivi-extension patch to apply
  against 2.2.0
- Add ti-sgx-ddk-km patch to add AGL toolchain configuration file
- Remove now unnecessary fdtoverlay recipe
- Update core.cfg and ivishell.cfg in weston-ini-conf recipe to handle
  move of ivi-controller.so configuration in Weston 5.0.0
- Update connman-ncurses patch to remove fuzz warning
- Add installation of systemd over-ride file for run-postinsts.service
  in run-postinsts bbappend to workaround race condition between
  ldconfig.service and the /sbin/ldconfig invocations in the
  post-install scripts run by run-postinsts.service.  The observed
  failure was cynara's post-install script failing and its database
  not being created.
- Remove now unnecessary valgrind backport
- Add patches to fix most driver compilation against newer kernels
- Update libmicrohttpd bbappend
- Remove libssp-dev from agl-image-graphical-qt5-crosssdk and
  agl-demo-platform-html5-crosssdk, upstream have removed it from
  non-mingw32 platform SDKs
- Update wayland-ivi-extension recipe to build 2.2.0, and update
  local patches
- Update weston patches for 5.0.0. Patches:

  0016-ivi-shell_add_screen_remove_layer_api.patch
  0017-ivi-shell-register-ivi_layout_interface.patch

  have been removed as they have been applied upstream and are no longer
  necessary. Patches:

  0018-compositor-add-output-type-to-weston_output.patch
  0019-compositor-drm-introduce-drm_get_dmafd_from_view.patch

  (both related to Waltham) have been disabled for now as they need
  significant rework.
- Remove weston-conf RRECOMMENDS in weston bbappend to avoid conflict
  with weston-ini-conf
- Add OECMAKE_GENERATOR = "Unix Makefiles" to aglwgt.bbclass to work
  around CMake+ninja issue in cmake-apps-module
- Update dbus cynara patches for 1.12.10
- Add do_install_append in cynara recipe to remove /var/cynara from
  cynara package so the directory creation and labelling in the
  post-install scriptlet will function as intended
- Remove now unnecessary e2fsprogs backport
- Remove now unnecessary libcap-ng backport
- Update pulseaudio patches to remove fuzz warnings
- Update neardal patch to remove fuzz warning
- Update freetype patch to remove fuzz warning
- Rename opencv bbappend to 3.% to handle 3.x backports in upstream
- Updated qtwayland patch to remove fuzz warning

Changes from Stephane Desneux <stephane.desneux@iot.bzh>:
- Remove wayland-ivi-extension PREFERRED_VERSION
- Remove now unnecessary nativesdk-cmake patch
- Remove now unnecessary ptest-runner patches
- Remove now unnecessary harfbuzz patches
- Disable waltham-transmitter as it does not build against weston 5.0.0
- Update af-main, cynara, and security-manager to use pkg_postinst_ontarget
- Bump connman-ncurses revision to avoid deprecated ncurses functions
- Update libva package usage with new intel-vaapi-driver name
- Add patches to security-manager to fix compilation with gcc8
- Updated systemd bbappend

Changes from Jan-Simon Möller <jsmoeller@linuxfoundation.org>:
- Remove meta-agl-bsp/ROCKO.FIXMEs
- Remove linux-yocto_4.12.bbappend and now unnecessary associated
  patch
- Remove now unneeded kern-tools-native patch
- Bump gstreamer PREFERRED_VERSIONs to 1.14.x
- Remove latencytop from packagegroup-agl-core-devel, it has been
  dropped by upstream
- Remove now unnecessary rpm patches
- Update pulseaudio bbappend to 12.2
- Update opencv bbappend to 3.4
- Update freetype bbappend to 2.9.1
- Update dbus bbappend to 1.12.10
- Update weston bbappend to 5.0.0
- Update cynara patches to remove fuzz warnings
- Add patch to cynara to fix compilation with gcc8
- Add xmlsec1 bbappend to clear EXTRA_OECONF to fix compilation on
  sumo or newer

Changes from Ronan Le Martet <ronan.lemartet@iot.bzh>:
- Update meta-rcar-gen3-adas layer gstreamer1.0-plugin-vspfilter
  bbappend to version 1.0.1

Known issues (marked with FIXME):
- CMake+ninja issue in cmake-apps-module has been worked around with
  OECMAKE_GENERATOR
- waltham-transmitter and the patches to weston related to it have been
  disabled
- Currently unclear if patch to libcap-native is actually required or
  not

Bug-AGL: SPEC-1837

Change-Id: I7b8b9ef667aec2d229952eace6663dfc761654d0
Signed-off-by: Scott Murray <scott.murray@konsulko.com>

4 files changed, 0 insertions, 304 deletions

diff --git a/meta-agl-profile-core/recipes-devtools/rpm/files/0001-Factor-out-and-unify-setting-CLOEXEC.patch b/meta-agl-profile-core/recipes-devtools/rpm/files/0001-Factor-out-and-unify-setting-CLOEXEC.patch
deleted file mode 100644
index cfddec6da..000000000
--- a/meta-agl-profile-core/recipes-devtools/rpm/files/0001-Factor-out-and-unify-setting-CLOEXEC.patch
+++ /dev/null
@@ -1,140 +0,0 @@
-From 0a66176074560303bf0870957464239e9757d891 Mon Sep 17 00:00:00 2001
-From: Kir Kolyshkin <kolyshkin@gmail.com>
-Date: Tue, 29 May 2018 17:37:05 -0700
-Subject: [PATCH 1/3] Factor out and unify setting CLOEXEC
-
-Commit 7a7c31f5 ("Set FD_CLOEXEC on opened files before exec from
-lua script is called") copied the code that sets CLOEXEC flag on all
-possible file descriptors from lib/rpmscript.c to luaext/lposix.c,
-essentially creating two copies of the same code (modulo comments
-and the unused assignment).
-
-This commit moves the functionality into its own function, without
-any code modifications, using the version from luaext/lposix.c.
-
-Signed-off-by: Kir Kolyshkin <kolyshkin@gmail.com>
-(cherry picked from commit 9c3e5de3240554c8ea1b29d52eeadee4840fefac)
----
- lib/rpmscript.c        | 17 ++---------------
- luaext/lposix.c        | 13 ++-----------
- rpmio/rpmio.c          | 14 ++++++++++++++
- rpmio/rpmio_internal.h |  6 ++++++
- 4 files changed, 24 insertions(+), 26 deletions(-)
-
-diff --git a/lib/rpmscript.c b/lib/rpmscript.c
-index 98d3f42..61dff83 100644
---- a/lib/rpmscript.c
-+++ b/lib/rpmscript.c
-@@ -18,6 +18,7 @@
- 
- #include "rpmio/rpmlua.h"
- #include "lib/rpmscript.h"
-+#include "rpmio/rpmio_internal.h"
- 
- #include "lib/rpmplugins.h"     /* rpm plugins hooks */
- 
-@@ -161,25 +162,11 @@ static const char * const SCRIPT_PATH = "PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr
- static void doScriptExec(ARGV_const_t argv, ARGV_const_t prefixes,
- 			FD_t scriptFd, FD_t out)
- {
--    int flag;
--    int fdno;
-     int xx;
--    int open_max;
- 
-     (void) signal(SIGPIPE, SIG_DFL);
- 
--    /* XXX Force FD_CLOEXEC on all inherited fdno's. */
--    open_max = sysconf(_SC_OPEN_MAX);
--    if (open_max == -1) {
--	open_max = 1024;
--    }
--    for (fdno = 3; fdno < open_max; fdno++) {
--	flag = fcntl(fdno, F_GETFD);
--	if (flag == -1 || (flag & FD_CLOEXEC))
--	    continue;
--	xx = fcntl(fdno, F_SETFD, FD_CLOEXEC);
--	/* XXX W2DO? debug msg for inheirited fdno w/o FD_CLOEXEC */
--    }
-+    rpmSetCloseOnExec();
- 
-     if (scriptFd != NULL) {
- 	int sfdno = Fileno(scriptFd);
-diff --git a/luaext/lposix.c b/luaext/lposix.c
-index 0a7c26c..5d7ad3c 100644
---- a/luaext/lposix.c
-+++ b/luaext/lposix.c
-@@ -27,6 +27,7 @@
- #include <unistd.h>
- #include <utime.h>
- #include <rpm/rpmutil.h>
-+#include "rpmio/rpmio_internal.h"
- 
- #define MYNAME		"posix"
- #define MYVERSION	MYNAME " library for " LUA_VERSION " / Nov 2003"
-@@ -335,21 +336,11 @@ static int Pexec(lua_State *L)			/** exec(path,[args]) */
- 	const char *path = luaL_checkstring(L, 1);
- 	int i,n=lua_gettop(L);
- 	char **argv;
--	int flag, fdno, open_max;
- 
- 	if (!have_forked)
- 	    return luaL_error(L, "exec not permitted in this context");
- 
--	open_max = sysconf(_SC_OPEN_MAX);
--	if (open_max == -1) {
--	    open_max = 1024;
--	}
--	for (fdno = 3; fdno < open_max; fdno++) {
--	    flag = fcntl(fdno, F_GETFD);
--	    if (flag == -1 || (flag & FD_CLOEXEC))
--		continue;
--	    fcntl(fdno, F_SETFD, FD_CLOEXEC);
--	}
-+	rpmSetCloseOnExec();
- 
- 	argv = malloc((n+1)*sizeof(char*));
- 	if (argv==NULL) return luaL_error(L,"not enough memory");
-diff --git a/rpmio/rpmio.c b/rpmio/rpmio.c
-index 0b90984..747bf3c 100644
---- a/rpmio/rpmio.c
-+++ b/rpmio/rpmio.c
-@@ -1477,4 +1477,18 @@ void fdFiniDigest(FD_t fd, int hashalgo,
-     }
- }
- 
-+void rpmSetCloseOnExec(void)
-+{
-+	int flag, fdno, open_max;
- 
-+	open_max = sysconf(_SC_OPEN_MAX);
-+	if (open_max == -1) {
-+		open_max = 1024;
-+	}
-+	for (fdno = 3; fdno < open_max; fdno++) {
-+		flag = fcntl(fdno, F_GETFD);
-+		if (flag == -1 || (flag & FD_CLOEXEC))
-+			continue;
-+		fcntl(fdno, F_SETFD, FD_CLOEXEC);
-+	}
-+}
-diff --git a/rpmio/rpmio_internal.h b/rpmio/rpmio_internal.h
-index 8c9f1a8..da39250 100644
---- a/rpmio/rpmio_internal.h
-+++ b/rpmio/rpmio_internal.h
-@@ -37,6 +37,12 @@ void fdFiniDigest(FD_t fd, int hashalgo,
- int rpmioSlurp(const char * fn,
-                 uint8_t ** bp, ssize_t * blenp);
- 
-+/**
-+ * Set close-on-exec flag for all opened file descriptors, except
-+ * stdin/stdout/stderr.
-+ */
-+void rpmSetCloseOnExec(void);
-+
- #ifdef __cplusplus
- }
- #endif
--- 
-2.7.4
-
diff --git a/meta-agl-profile-core/recipes-devtools/rpm/files/0002-Optimize-rpmSetCloseOnExec.patch b/meta-agl-profile-core/recipes-devtools/rpm/files/0002-Optimize-rpmSetCloseOnExec.patch
deleted file mode 100644
index 9354dd6e0..000000000
--- a/meta-agl-profile-core/recipes-devtools/rpm/files/0002-Optimize-rpmSetCloseOnExec.patch
+++ /dev/null
@@ -1,102 +0,0 @@
-From 6f56aa01a357bbcf9401d79a378ae380f5f939d4 Mon Sep 17 00:00:00 2001
-From: Kir Kolyshkin <kolyshkin@gmail.com>
-Date: Tue, 29 May 2018 17:52:56 -0700
-Subject: [PATCH 2/3] Optimize rpmSetCloseOnExec
-
-In case maximum number of open files limit is set too high, both
-luaext/Pexec() and lib/doScriptExec() spend way too much time
-trying to set FD_CLOEXEC flag for all those file descriptors,
-resulting in severe increase of time it takes to execute say
-rpm or dnf.
-
-This becomes increasingly noticeable when running with e.g. under
-Docker, the reason being:
-
-> $ docker run fedora ulimit -n
-> 1048576
-
-One obvious fix is to use procfs to get the actual list of opened fds
-and iterate over it. My quick-n-dirty benchmark shows the /proc approach
-is about 10x faster than iterating through a list of just 1024 fds,
-so it's an improvement even for default ulimit values.
-
-Note that the old method is still used in case /proc is not available.
-
-While at it,
-
- 1. fix the function by making sure we modify (rather than set)
-    the existing flags. As the only known flag is FD_CLOEXEC,
-    this change is currently purely aesthetical, but in case
-    other flags will appear it will become a real bug fix.
-
- 2. get rid of magic number 3; use STDERR_FILENO
-
-Signed-off-by: Kir Kolyshkin <kolyshkin@gmail.com>
-
-Fixes #444
-
-(cherry picked from commit 5e6f05cd8dad6c1ee6bd1e6e43f176976c9c3416)
----
- rpmio/rpmio.c | 43 ++++++++++++++++++++++++++++++++++---------
- 1 file changed, 34 insertions(+), 9 deletions(-)
-
-diff --git a/rpmio/rpmio.c b/rpmio/rpmio.c
-index 747bf3c..8148aa2 100644
---- a/rpmio/rpmio.c
-+++ b/rpmio/rpmio.c
-@@ -1477,18 +1477,43 @@ void fdFiniDigest(FD_t fd, int hashalgo,
-     }
- }
- 
-+static void set_cloexec(int fd)
-+{
-+	int flags = fcntl(fd, F_GETFD);
-+
-+	if (flags == -1 || (flags & FD_CLOEXEC))
-+		return;
-+
-+	fcntl(fd, F_SETFD, flags | FD_CLOEXEC);
-+}
-+
- void rpmSetCloseOnExec(void)
- {
--	int flag, fdno, open_max;
-+	const int min_fd = STDERR_FILENO; /* don't touch stdin/out/err */
-+	int fd;
-+
-+	DIR *dir = opendir("/proc/self/fd");
-+	if (dir == NULL) { /* /proc not available */
-+		/* iterate over all possible fds, might be slow */
-+		int open_max = sysconf(_SC_OPEN_MAX);
-+		if (open_max == -1)
-+			open_max = 1024;
- 
--	open_max = sysconf(_SC_OPEN_MAX);
--	if (open_max == -1) {
--		open_max = 1024;
-+		for (fd = min_fd + 1; fd < open_max; fd++)
-+			set_cloexec(fd);
-+
-+		return;
- 	}
--	for (fdno = 3; fdno < open_max; fdno++) {
--		flag = fcntl(fdno, F_GETFD);
--		if (flag == -1 || (flag & FD_CLOEXEC))
--			continue;
--		fcntl(fdno, F_SETFD, FD_CLOEXEC);
-+
-+	/* iterate over fds obtained from /proc */
-+	struct dirent *entry;
-+	while ((entry = readdir(dir)) != NULL) {
-+		fd = atoi(entry->d_name);
-+		if (fd > min_fd)
-+			set_cloexec(fd);
- 	}
-+
-+	closedir(dir);
-+
-+	return;
- }
--- 
-2.7.4
-
diff --git a/meta-agl-profile-core/recipes-devtools/rpm/files/0003-rpmSetCloseOnExec-use-getrlimit.patch b/meta-agl-profile-core/recipes-devtools/rpm/files/0003-rpmSetCloseOnExec-use-getrlimit.patch
deleted file mode 100644
index d9b813ece..000000000
--- a/meta-agl-profile-core/recipes-devtools/rpm/files/0003-rpmSetCloseOnExec-use-getrlimit.patch
+++ /dev/null
@@ -1,55 +0,0 @@
-From 1f5438d677dca330642158ec0b1c0366c6a65725 Mon Sep 17 00:00:00 2001
-From: Kir Kolyshkin <kolyshkin@gmail.com>
-Date: Tue, 29 May 2018 18:09:27 -0700
-Subject: [PATCH 3/3] rpmSetCloseOnExec: use getrlimit()
-
-In case /proc is not available to get the actual list of opened fds,
-we fall back to iterating through the list of all possible fds.
-
-It is possible that during the course of the program execution the limit
-on number of open file descriptors might be lowered, so using the
-current limit, as returned by sysconf(_SC_OPEN_MAX), might omit some
-fds. Therefore, it is better to use rlim_max from the structure
-filled in by gertlimit(RLIMIT_NOFILE) to make sure we're checking
-all fds.
-
-This slows down the function, but only in the case /proc is not
-available, which should be rare in practice.
-
-Signed-off-by: Kir Kolyshkin <kolyshkin@gmail.com>
-(cherry picked from commit 307e28b4cb08b05bc044482058eeebc9f59bb9a9)
----
- rpmio/rpmio.c | 10 +++++++++-
- 1 file changed, 9 insertions(+), 1 deletion(-)
-
-diff --git a/rpmio/rpmio.c b/rpmio/rpmio.c
-index 8148aa2..0698e53 100644
---- a/rpmio/rpmio.c
-+++ b/rpmio/rpmio.c
-@@ -10,6 +10,7 @@
- #include <sys/personality.h>
- #endif
- #include <sys/utsname.h>
-+#include <sys/resource.h>
- 
- #include <rpm/rpmlog.h>
- #include <rpm/rpmmacro.h>
-@@ -1495,7 +1496,14 @@ void rpmSetCloseOnExec(void)
- 	DIR *dir = opendir("/proc/self/fd");
- 	if (dir == NULL) { /* /proc not available */
- 		/* iterate over all possible fds, might be slow */
--		int open_max = sysconf(_SC_OPEN_MAX);
-+		struct rlimit rl;
-+		int open_max;
-+
-+		if (getrlimit(RLIMIT_NOFILE, &rl) == 0 && rl.rlim_max != RLIM_INFINITY)
-+			open_max = rl.rlim_max;
-+		else
-+			open_max = sysconf(_SC_OPEN_MAX);
-+
- 		if (open_max == -1)
- 			open_max = 1024;
- 
--- 
-2.7.4
-
diff --git a/meta-agl-profile-core/recipes-devtools/rpm/rpm_%.bbappend b/meta-agl-profile-core/recipes-devtools/rpm/rpm_%.bbappend
deleted file mode 100644
index 1333a97c0..000000000
--- a/meta-agl-profile-core/recipes-devtools/rpm/rpm_%.bbappend
+++ /dev/null
@@ -1,7 +0,0 @@
-FILESEXTRAPATHS_append := ":${THISDIR}/files"
-
-SRC_URI_append = "\
-    file://0001-Factor-out-and-unify-setting-CLOEXEC.patch \
-    file://0002-Optimize-rpmSetCloseOnExec.patch \
-    file://0003-rpmSetCloseOnExec-use-getrlimit.patch \
-"